ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8wduM01 - ECOD Domain | ECOD

ECOD/Domains/e8wduM01

e8wduM01

UID: 004875161

PDB

Range: M:1-302
PDB: 8WDU chain M(all domains)

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll aBCL
Bacteriopheophytin aBPH
CardiolipinCDL
SpirilloxanthinCRT
FE (III) IONFE
metal
Protoporphyrin ix containing fe

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 8WDU RCSB PDB: 8WDU PDBe: 8WDU

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

MENAQUINONE 8MQ8

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

Ubiquinone-8UQ8

+ 2 additives (Lauryl dimethylamine-n-oxide, Dodecyl-beta-d-maltoside)

Lauryl dimethylamine-n-oxideLDA
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.