ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9dfwA02 - ECOD Domain | ECOD

ECOD/Domains/e9dfwA02

e9dfwA02

UID: 004881443

PDB

Range: A:36-279
PDB: 9DFW chain A(all domains)

Molecule: Radical SAM core domain-containing protein

3D Structure

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Related Domains

Browse other domains in Radical_SAM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM(2002.1.1.120)

Ligands

in contact, ≤ 4 Å

CYTIDINE-5'-TRIPHOSPHATECTP
Magnesium ionMG
metal
S-adenosylmethionineSAM
Iron/sulfur clusterSF4

+ 2 additives (4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycerol)

4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 9DFW RCSB PDB: 9DFW PDBe: 9DFW

Downloads

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GlycerolGOL

Shown in the structure viewer.