ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9ksjA01 - ECOD Domain | ECOD

ECOD/Domains/e9ksjA01

e9ksjA01

UID: 004884198

PDB

Range: A:1-186
PDB: 9KSJ chain A(all domains)

Molecule: 3C-like proteinase nsp5

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

3-[[(6E)-6-(6-chloranyl-2-methyl-indazol-5-yl)imino-3-[5-(2-methoxyethoxy)pyridin-3-yl]-2,4-bis(oxidanylidene)-1,3,5-triazinan-1-yl]methyl]-4-methyl-benzenecarbonitrileA1EGR

Shown in the structure viewer.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 9KSJ RCSB PDB: 9KSJ PDBe: 9KSJ

Downloads

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