ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9iy7A1 - ECOD Domain | ECOD

ECOD/Domains/e9iy7A1

e9iy7A1

UID: 004887964

PDB

Range: A:78-617
PDB: 9IY7 chain A(all domains)

Molecule: Sodium-dependent serotonin transporter

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySNF(5051.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
DecaneD10
DodecaneD12
nonaneDD9
(2~{S})-2-(2-chlorophenyl)-2-(methylamino)cyclohexan-1-oneJC9
Sodium ionNA

Pfam Families

Sodium:neurotransmitter symporter family

ClanCL0062APC

External Links

ECOD PDB View: 9IY7 RCSB PDB: 9IY7 PDBe: 9IY7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

N-octaneOCT

Cholesterol hemisuccinateY01

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.