ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9klmM1 - ECOD Domain | ECOD

ECOD/Domains/e9klmM1

e9klmM1

UID: 004888199

PDB

Range: M:1-306
PDB: 9KLM chain M(all domains)

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,26,30-dodecaeneA1EF2
Bacteriochlorophyll aBCL
Bacteriopheophytin aBPH
CardiolipinCDL
FE (III) IONFE
metal

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 9KLM RCSB PDB: 9KLM PDBe: 9KLM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

UBIQUINONE-10U10

+ 2 additives (Lauryl dimethylamine-n-oxide, Dodecyl-beta-d-maltoside)

Lauryl dimethylamine-n-oxideLDA
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.