ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9mljA2 - ECOD Domain | ECOD

ECOD/Domains/e9mljA2

e9mljA2

UID: 004888833

PDB

Range: A:185-304
PDB: 9MLJ chain A(all domains)

Molecule: 3C-like proteinase nsp5

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

(3S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}-7-fluoro-2-[3-methyl-N-(trifluoroacetyl)-L-valyl]-1,2,3,4-tetrahydroisoquinoline-3-carboxamideA1BMU
Sodium ionNA
metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 9MLJ RCSB PDB: 9MLJ PDBe: 9MLJ

Downloads

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