ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e9ldgA1 - ECOD Domain | ECOD

ECOD/Domains/e9ldgA1

e9ldgA1

UID: 004905557

PDB

Range: A:4-87
PDB: 9LDG chain A(all domains)

Molecule: Probable RNA 2'-phosphotransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in PTS_2-RNA →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyPTS_2-RNA(101.1.2.29)

Ligands

in contact, ≤ 4 Å

[[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphateA1EJE

Shown in the structure viewer.

Pfam Families

PF01885PTS_2-RNA

RNA 2'-phosphotransferase, Tpt1 / KptA family

ClanCL0084ADP-ribosyl

External Links

ECOD PDB View: 9LDG RCSB PDB: 9LDG PDBe: 9LDG

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure