ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9ldgA2 - ECOD Domain | ECOD

ECOD/Domains/e9ldgA2

e9ldgA2

UID: 004905558

PDB

Range: A:88-180
PDB: 9LDG chain A(all domains)

Molecule: Probable RNA 2'-phosphotransferase

3D Structure

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Related Domains

Browse other domains in PTS_2-RNA →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupADP-ribosylation(237)

HH-groupADP-ribosylation(237.1)

TT-groupADP-ribosylation(237.1.1)

FFamilyPTS_2-RNA(237.1.1.4)

Ligands

in contact, ≤ 4 Å

[[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphateA1EJE

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer.

Pfam Families

PF01885PTS_2-RNA

RNA 2'-phosphotransferase, Tpt1 / KptA family

ClanCL0084ADP-ribosyl

External Links

ECOD PDB View: 9LDG RCSB PDB: 9LDG PDBe: 9LDG

Downloads

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