ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9ldgB1 - ECOD Domain | ECOD

ECOD/Domains/e9ldgB1

e9ldgB1

UID: 004905559

PDB

Range: B:5-88
PDB: 9LDG chain B(all domains)

Molecule: Probable RNA 2'-phosphotransferase

3D Structure

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Related Domains

Browse other domains in PTS_2-RNA →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyPTS_2-RNA(101.1.2.29)

Ligands

in contact, ≤ 4 Å

[[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphateA1EJE

Shown in the structure viewer.

Pfam Families

PF01885PTS_2-RNA

RNA 2'-phosphotransferase, Tpt1 / KptA family

ClanCL0084ADP-ribosyl

External Links

ECOD PDB View: 9LDG RCSB PDB: 9LDG PDBe: 9LDG

Downloads

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