ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9p3sB2 - ECOD Domain | ECOD

ECOD/Domains/e9p3sB2

e9p3sB2

UID: 004915930

PDB

Range: B:336-997
PDB: 9P3S chain B(all domains)

Molecule: Transient receptor potential cation channel subfamily M member 5 isoform X1

3D Structure

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Related Domains

Browse other domains in Ion_trans, TRPM2 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupAnkyrin repeat(109.3)

TT-groupAnkyrin repeat(109.3.1)

FFamilyIon_trans, TRPM2(109.3.1.167)

Ligands

in contact, ≤ 4 Å

(2R)-2-(hydroxymethyl)-4-{[(10xi,13xi,22xi,25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosideA1CG0
5-chloro-N-[(5-chloro-1,3-thiazol-2-yl)methyl]-1,2-benzothiazol-6-amineA1CGW
TigogeninA1CGZ
Calcium ionCA
metal
2-acetamido-2-deoxy-beta-D-glucopyranose

Pfam Families

PF00520Ion_trans

Ion transport protein

ClanCL0030Ion_channel

TRPM2-like domain

External Links

ECOD PDB View: 9P3S RCSB PDB: 9P3S PDBe: 9P3S

Downloads

Download Domain FASTA Full PDB Structure

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