ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9p3tC2 - ECOD Domain | ECOD

ECOD/Domains/e9p3tC2

e9p3tC2

UID: 004915940

PDB

Range: C:336-997
PDB: 9P3T chain C(all domains)

Molecule: Green fluorescent protein,Transient receptor potential cation channel subfamily M member 5

3D Structure

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Related Domains

Browse other domains in Ion_trans, TRPM2 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupAnkyrin repeat(109.3)

TT-groupAnkyrin repeat(109.3.1)

FFamilyIon_trans, TRPM2(109.3.1.167)

Ligands

in contact, ≤ 4 Å

oxotri(phenyl)-lambda~5~-phosphaneA1CG5
Calcium ionCA
metal
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG
(25R)-14beta,17beta-spirost-5-en-3beta-olYUV
(2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosideYUY

Pfam Families

PF00520Ion_trans

Ion transport protein

ClanCL0030Ion_channel

TRPM2-like domain

External Links

ECOD PDB View: 9P3T RCSB PDB: 9P3T PDBe: 9P3T

Downloads

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