ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9qneA1 - ECOD Domain | ECOD

ECOD/Domains/e9qneA1

e9qneA1

UID: 004918033

PDB

Range: A:10-134
PDB: 9QNE chain A(all domains)

Molecule: Streptavidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(3-sulfanylphenyl)pentanamideA1I7Y

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

Avidin family

External Links

ECOD PDB View: 9QNE RCSB PDB: 9QNE PDBe: 9QNE

Downloads

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