ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9smoA1 - ECOD Domain | ECOD

ECOD/Domains/e9smoA1

e9smoA1

UID: 004920193

PDB

Range: A:2-210,A:292-356
PDB: 9SMO chain A(all domains)

Molecule: Exonuclease 1

3D Structure

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Related Domains

Browse other domains in XPG_N,XPG_I →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupPIN domain-like(2006.1.4)

FFamilyXPG_N,XPG_I(2006.1.4.1)

Ligands

in contact, ≤ 4 Å

1-(4-chloranyl-2,7-naphthyridin-1-yl)-5-oxidanyl-3-[(1~{S})-1-phenylethyl]-2~{H}-pyrido[2,1-f][1,2,4]triazine-4,6-dioneA1JO0
Magnesium ionMG
metal
Sodium ionNA
metal

Shown in the structure viewer.

Pfam Families

XPG N-terminal domain

ClanCL0280PIN

XPG I-region

ClanCL04645_3_exonuc_C

External Links

ECOD PDB View: 9SMO RCSB PDB: 9SMO PDBe: 9SMO

Downloads

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