ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9yt3B1 - ECOD Domain | ECOD

ECOD/Domains/e9yt3B1

e9yt3B1

UID: 004924393

PDB

Range: B:12-158,B:192-194,B:251-305
PDB: 9YT3 chain B(all domains)

Molecule: Cysteine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1e →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1e(2005.1.1.12)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATELMS
Sodium ionNA
metal
Zinc ionZN
metal

+ 1 additive (Malonate ion)

Pfam Families

PF01406tRNA-synt_1e

tRNA synthetases class I (C) catalytic domain

ClanCL0039HUP

External Links

ECOD PDB View: 9YT3 RCSB PDB: 9YT3 PDBe: 9YT3

Downloads

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Malonate ion

Shown in the structure viewer.