ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A9Y1BJB2_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/A0A9Y1BJB2_F1_nD4

A0A9Y1BJB2_F1_nD4

UID: 004943462

AlphaFold

Range: 656-885
AlphaFold: AF-A0A9Y1BJB2
UniProt: A0A9Y1BJB2 (all domains)
Gene: rpo1N

Protein: DNA-directed RNA polymerase subunit Rpo1N (EC 2.7.7.6) (DNA-directed RNA polymerase subunit A')

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958)

HH-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1)

TT-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1.1)

FFamilyRNA_pol_Rpb1_5(4958.1.1.4)

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

AlphaFold DB: A0A9Y1BJB2 UniProt: A0A9Y1BJB2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 656-885