ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A0AAF0D2X4_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0AAF0D2X4_F1_nD1

A0AAF0D2X4_F1_nD1

UID: 004947918

AlphaFold

Range: 1-170
AlphaFold: AF-A0AAF0D2X4
UniProt: A0AAF0D2X4 (all domains)
Gene: OdinLCB4_001775

Protein: tRNA (cytidine(56)-2'-O)-methyltransferase (EC 2.1.1.206) (tRNA ribose 2'-O-methyltransferase aTrm56)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Trm56 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTrm56(2488.1.1.4)

Pfam Families

tRNA ribose 2'-O-methyltransferase, aTrm56

ClanCL0098SPOUT

External Links

AlphaFold DB: A0AAF0D2X4 UniProt: A0AAF0D2X4

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-170