ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1o82B1 - ECOD Domain | ECOD

ECOD/Domains/e1o82B1

e1o82B1

UID: 000049825

PDB

Range: B:1-70
PDB: 1O82 chain B(all domains)
UniProt: Q47765 (all domains)
Gene: as-48

Molecule: PEPTIDE ANTIBIOTIC AS-48

3D Structure

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Related Domains

Browse other domains in Bacteriocin_IId →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSaposin-like(198)

HH-groupBacteriocin AS-48-related(198.2)

TT-groupBacteriocin AS-48-related(198.2.1)

FFamilyBacteriocin_IId(198.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09221Bacteriocin_IId

Bacteriocin class IId cyclical uberolysin-like

External Links

ECOD PDB View: 1O82 RCSB PDB: 1O82 PDBe: 1O82 UniProt: Q47765

Downloads

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