ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5JDB6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5JDB6_F1_nD2

Q5JDB6_F1_nD2

UID: 005012371

AlphaFold

Range: 161-375
AlphaFold: AF-Q5JDB6
UniProt: Q5JDB6 (all domains)
Gene: truD

Protein: Probable tRNA pseudouridine synthase D (EC 5.4.99.27) (tRNA pseudouridine(13) synthase) (tRNA pseudouridylate synthase D) (tRNA-uridine isomerase D)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TruD →

Classification

AArchitecturea+b two layers(a.11)

XX-grouptRNA pseudouridine synthase TruD insertion domain(1056)

HH-grouptRNA pseudouridine synthase TruD insertion domain(1056.1)

TT-grouptRNA pseudouridine synthase TruD insertion domain(1056.1.1)

FFamilyTruD(1056.1.1.1)

Pfam Families

tRNA pseudouridine synthase D (TruD)

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: Q5JDB6 UniProt: Q5JDB6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 161-375