ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5JF45_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5JF45_F1_nD1

Q5JF45_F1_nD1

UID: 005013177

AlphaFold

Range: 1-198
AlphaFold: AF-Q5JF45
UniProt: Q5JF45 (all domains)
Gene: trmY

Protein: tRNA (pseudouridine(54)-N(1))-methyltransferase (EC 2.1.1.257)

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_2(2488.1.1.8)

Pfam Families

PF04013Methyltrn_RNA_2

Putative SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

AlphaFold DB: Q5JF45 UniProt: Q5JF45

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-198