ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9lmzB1 - ECOD Domain | ECOD

ECOD/Domains/e9lmzB1

e9lmzB1

UID: 005085022

PDB

Range: B:440-574
PDB: 9LMZ chain B(all domains)

Molecule: Protein argonaute-2

3D Structure

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Related Domains

Browse other domains in Piwi,ArgoMid →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMiddle domain in Argonaute homologs(7590)

HH-groupMiddle domain in Argonaute homologs(7590.1)

TT-groupMiddle domain in Argonaute homologs(7590.1.1)

FFamilyPiwi,ArgoMid(7590.1.1.3)

Ligands

in contact, ≤ 4 Å

[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)thieno[2,3-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphateA1EY1
(4S)-4-amino-5-hydroxypentanamideECC

Shown in the structure viewer.

Pfam Families

Piwi domain

ClanCL0219RNase_H

PF16487ArgoMid

Mid domain of argonaute

External Links

ECOD PDB View: 9LMZ RCSB PDB: 9LMZ PDBe: 9LMZ

Downloads

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