ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3u69H1 - ECOD Domain | ECOD

ECOD/Domains/e3u69H1

e3u69H1

UID: 005090455

PDB

Range: H:1-257
PDB: 3U69 chain H(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Prothrombin

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

BicineBCN
Chloride ionCL
Iodide ionIOD
(4R)-2-METHYLPENTANE-2,4-DIOLMRD
Sodium ionNA
metal
2-acetamido-2-deoxy-beta-D-glucopyranose

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 3U69 RCSB PDB: 3U69 PDBe: 3U69 UniProt: P00734

Downloads

Download Domain PDB Full PDB Structure

+ 1 additive ((4S)-2-METHYL-2,4-PENTANEDIOL)

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer.