ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1m55A1 - ECOD Domain | ECOD

ECOD/Domains/e1m55A1

e1m55A1

UID: 000005113

RepresentativePDB

Range: A:1-193
PDB: 1M55 chain A(all domains)
UniProt: Q9YJC1 (all domains)
Gene: rep

Molecule: Rep protein

3D Structure

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Related Domains

Browse other domains in Rep_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyRep_N(304.55.1.7)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Rep protein catalytic domain like

ClanCL0169Rep

External Links

ECOD PDB View: 1M55 RCSB PDB: 1M55 PDBe: 1M55 UniProt: Q9YJC1

Downloads

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