ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7mdfA1 - ECOD Domain | ECOD

ECOD/Domains/e7mdfA1

e7mdfA1

UID: 005113977

PDB

Range: A:1-65,A:239-337
PDB: 7MDF chain A(all domains)

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase(223.3.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
methyl N~2~-[4-(4-bromophenyl)butanoyl]-D-asparaginyl-L-alaninateZ9A
N~2~-[4-(4-bromophenyl)butanoyl]-D-asparagineZ9G

+ 3 additives (Nonaethylene glycol, Dimethyl sulfoxide, Sulfate ion)

Nonaethylene glycol2PE
Dimethyl sulfoxideDMS

Pfam Families

PF00144Beta-lactamase

Beta-lactamase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 7MDF RCSB PDB: 7MDF PDBe: 7MDF

Downloads

Download Domain PDB Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer.