ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b1zA1 - ECOD Domain | ECOD

ECOD/Domains/e8b1zA1

e8b1zA1

UID: 005127392

PDB

Range: A:4-242
PDB: 8B1Z chain A(all domains)
UniProt: C7C422 (all domains)
Gene: blaNDM-1

Molecule: Beta-lactamase NDM-1

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
3-[(~{E})-[3-sulfanyl-5-[4-(trifluoromethyl)phenyl]-1,2,4-triazol-4-yl]iminomethyl]benzoic acidORL
Zinc ionZN
metal

+ 2 additives (Pentaethylene glycol, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID)

Pentaethylene glycol1PE

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 8B1Z RCSB PDB: 8B1Z PDBe: 8B1Z UniProt: C7C422

Downloads

Download Domain PDB Full PDB Structure

4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDEPE

Shown in the structure viewer.