ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bsuD1 - ECOD Domain | ECOD

ECOD/Domains/e8bsuD1

e8bsuD1

UID: 005128258

PDB

Range: D:1-109,D:216-258
PDB: 8BSU chain D(all domains)

Molecule: Glutamate receptor ionotropic, kainate 3

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

4-cyclopropyl-7-fluoro-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide2J9
Chloride ionCL
3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINEKAI
Zinc ionZN
metal

+ 2 additives (Glycerol, Sulfate ion)

Glycerol

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 8BSU RCSB PDB: 8BSU PDBe: 8BSU

Downloads

Download Domain PDB Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer.