ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ccjA2 - ECOD Domain | ECOD

ECOD/Domains/e8ccjA2

e8ccjA2

UID: 005129640

PDB

Range: A:13-128,A:250-318
PDB: 8CCJ chain A(all domains)
UniProt: A0R7I9 (all domains)
Gene: trxB

Molecule: Thioredoxin reductase

3D Structure

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Related Domains

Browse other domains in FAD_binding_2,Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFAD_binding_2,Pyr_redox_2(2003.1.2.8)

Ligands

in contact, ≤ 4 Å

Flavin-adenine dinucleotideFAD
Magnesium ionMG
metal
Nadp nicotinamide-adenine-dinucleotide phosphateNAP

+ 2 additives (Dimethyl sulfoxide, Glycerol)

Dimethyl sulfoxideDMS
GlycerolGOL

Pfam Families

PF00890FAD_binding_2

FAD binding domain

ClanCL0063NADP_Rossmann

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8CCJ RCSB PDB: 8CCJ PDBe: 8CCJ UniProt: A0R7I9

Downloads

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