ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cg9A1 - ECOD Domain | ECOD

ECOD/Domains/e8cg9A1

e8cg9A1

UID: 005130195

PDB

Range: A:1-322
PDB: 8CG9 chain A(all domains)

Molecule: DNA cross-link repair 1A protein

3D Structure

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Related Domains

Browse other domains in DRMBL,Lactamase_B_2 →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyDRMBL,Lactamase_B_2(247.1.1.10)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal
1-[(2S)-2,3-dihydro-1,4-benzodioxin-2-ylmethyl]-3-hydroxythieno[3,2-d]pyrimidine-2,4(1H,3H)-dioneR3Z
1-[[(3~{R})-2,3-dihydro-1,4-benzodioxin-3-yl]methyl]-3-oxidanyl-thieno[3,2-d]pyrimidine-2,4-dioneXOB
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Pfam Families

DNA repair metallo-beta-lactamase

ClanCL0398RMMBL_DRMBL

PF12706Lactamase_B_2

Beta-lactamase superfamily domain

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 8CG9 RCSB PDB: 8CG9 PDBe: 8CG9

Downloads

Download Domain PDB Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer.