ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8f8kA1 - ECOD Domain | ECOD

ECOD/Domains/e8f8kA1

e8f8kA1

UID: 005134309

PDB

Range: A:46-385
PDB: 8F8K chain A(all domains)

Molecule: (2E,6E)-farnesyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in polyprenyl_synt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilypolyprenyl_synt(141.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATEIPE

+ 2 additives (Acetate ion, Glycerol)

Acetate ionACT
GlycerolGOL

Pfam Families

PF00348polyprenyl_synt

Polyprenyl synthetase

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 8F8K RCSB PDB: 8F8K PDBe: 8F8K

Downloads

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