ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8irdB2 - ECOD Domain | ECOD

ECOD/Domains/e8irdB2

e8irdB2

UID: 005147255

PDB

Range: B:1-327,B:444-505
PDB: 8IRD chain B(all domains)
UniProt: D0VWR1 (all domains)
Gene: psbB

Molecule: Photosystem II CP47 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta-caroteneBCR
Chlorophyll aCLA
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD
heptyl 1-thio-beta-D-glucopyranosideHTG
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 8IRD RCSB PDB: 8IRD PDBe: 8IRD UniProt: D0VWR1

Downloads

Download Domain PDB Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 2 additives (Glycerol, Dodecyl-beta-d-maltoside)

GlycerolGOL
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.