ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8je7A1 - ECOD Domain | ECOD

ECOD/Domains/e8je7A1

e8je7A1

UID: 005149994

PDB

Range: A:1-289,A:298-299,A:308-309
PDB: 8JE7 chain A(all domains)

Molecule: PROLYL-TRNA SYNTHETASE

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
Chloride ionCL
7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-oneHFG
~{N}-[4-[(3~{S})-3-cyano-3-cyclopropyl-2-oxidanylidene-pyrrolidin-1-yl]-6-methyl-pyridin-2-yl]-2-phenyl-ethanamideJE6

+ 1 additive (Glycerol)

GlycerolGOL

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 8JE7 RCSB PDB: 8JE7 PDBe: 8JE7

Downloads

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