ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8k5xB2 - ECOD Domain | ECOD

ECOD/Domains/e8k5xB2

e8k5xB2

UID: 005153624

PDB

Range: B:83-241
PDB: 8K5X chain B(all domains)

Molecule: Matrix metalloproteinase-9

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Dihydrogenphosphate ion2HP
Calcium ionCA
metal
Chloride ionCL
(6-cyclopropyl-1~{H}-indol-2-yl)-(5,7,8,9-tetrahydropyrido[4,3-c]azepin-6-yl)methanoneVOZ
Zinc ionZN
metal

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 8K5X RCSB PDB: 8K5X PDBe: 8K5X

Downloads

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