ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ynrD1 - ECOD Domain | ECOD

ECOD/Domains/e1ynrD1

e1ynrD1

UID: 000051585

PDB

Range: D:1-79
PDB: 1YNR chain D(all domains)
UniProt: P15452 (all domains)
Gene: HTH_0988

Molecule: Cytochrome c-552

3D Structure

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Related Domains

Browse other domains in Cytochrom_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyCytochrom_C(107.1.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF00034Cytochrom_C

Cytochrome c

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 1YNR RCSB PDB: 1YNR PDBe: 1YNR UniProt: P15452

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.