ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8pieC1 - ECOD Domain | ECOD

ECOD/Domains/e8pieC1

e8pieC1

UID: 005163063

PDB

Range: C:1-171
PDB: 8PIE chain C(all domains)

Molecule: Nucleoside diphosphate kinase B

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate7QT

Shown in the structure viewer.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 8PIE RCSB PDB: 8PIE PDBe: 8PIE

Downloads

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