ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8pvmB1 - ECOD Domain | ECOD

ECOD/Domains/e8pvmB1

e8pvmB1

UID: 005165846

PDB

Range: B:210-511
PDB: 8PVM chain B(all domains)
UniProt: P29166 (all domains)

Molecule: Iron hydrogenase 1

3D Structure

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Related Domains

Browse other domains in Fe_hyd_lg_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFe-only hydrogenase(7556)

HH-groupFe-only hydrogenase(7556.1)

TT-groupFe-only hydrogenase(7556.1.1)

FFamilyFe_hyd_lg_C(7556.1.1.1)

Ligands

in contact, ≤ 4 Å

dicarbonyl[bis(cyanide-kappaC)]-mu-(iminodimethanethiolatato-1kappaS:2kappaS)-mu-(oxomethylidene)diiron(2+)402
methyl radical74C
Chloride ionCL
Magnesium ionMG
metal
Iron/sulfur clusterSF4

+ 1 additive (Glycerol)

Pfam Families

PF02906Fe_hyd_lg_C

Iron only hydrogenase large subunit, C-terminal domain

External Links

ECOD PDB View: 8PVM RCSB PDB: 8PVM PDBe: 8PVM UniProt: P29166

Downloads

Download Domain PDB Full PDB Structure

GlycerolGOL

Shown in the structure viewer.