ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8qjmA1 - ECOD Domain | ECOD

ECOD/Domains/e8qjmA1

e8qjmA1

UID: 005169657

PDB

Range: A:1-244
PDB: 8QJM chain A(all domains)

Molecule: S1/P1 Nuclease

3D Structure

Loading viewer...

Related Domains

Browse other domains in S1-P1_nuclease →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhospholipase C/P1 nuclease(177)

HH-groupPhospholipase C/P1 nuclease(177.1)

TT-groupPhospholipase C/P1 nuclease(177.1.1)

FFamilyS1-P1_nuclease(177.1.1.2)

Ligands

in contact, ≤ 4 Å

CYTIDINE-5'-MONOPHOSPHATEC5P
Sodium ionNA
metal
Zinc ionZN
metal

+ 2 additives (Pentaethylene glycol, Sulfate ion)

Pentaethylene glycol1PE
Sulfate ion

Pfam Families

PF02265S1-P1_nuclease

S1/P1 Nuclease

ClanCL0368PhosC-NucP1

External Links

ECOD PDB View: 8QJM RCSB PDB: 8QJM PDBe: 8QJM

Downloads

Download Domain PDB Full PDB Structure

Shown in the structure viewer.