ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8reaD6 - ECOD Domain | ECOD

ECOD/Domains/e8reaD6

e8reaD6

UID: 005177055

PDB

Range: D:809-935
PDB: 8REA chain D(all domains)

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275)

HH-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1)

TT-groupMoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase(275.1.1)

FFamilyRNA_pol_Rpb1_5(275.1.1.4)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 8REA RCSB PDB: 8REA PDBe: 8REA

Downloads

Full PDB Structure