ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rlyA1 - ECOD Domain | ECOD

ECOD/Domains/e8rlyA1

e8rlyA1

UID: 005178844

PDB

Range: A:1-285
PDB: 8RLY chain A(all domains)
UniProt: P0A6C1 (all domains)
Gene: nfo

Molecule: Endonuclease 4

3D Structure

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Related Domains

Browse other domains in AP_endonuc_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAP_endonuc_2(2002.1.1.60)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
FE (II) IONFE2
metal
NICKEL (II) IONNI
metal
Zinc ionZN
metal

+ 2 additives (4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Sulfate ion)

Pfam Families

PF01261AP_endonuc_2

Xylose isomerase-like TIM barrel

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 8RLY RCSB PDB: 8RLY PDBe: 8RLY UniProt: P0A6C1

Downloads

Download Domain PDB Full PDB Structure

4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDEPE
Sulfate ionSO4

Shown in the structure viewer.