ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8uugA2 - ECOD Domain | ECOD

ECOD/Domains/e8uugA2

e8uugA2

UID: 005205126

PDB

Range: A:64-318
PDB: 8UUG chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Papain-like protease nsp3

3D Structure

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Related Domains

Browse other domains in CoV_peptidase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyCoV_peptidase(219.1.1.43)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
N-[(1R)-1-{(3M,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-[1-(methoxymethyl)-1H-pyrazol-4-yl]phenyl}ethyl]-5-[2-(dimethylamino)ethoxy]-2-methylbenzamideXXW
Zinc ionZN
metal

+ 2 additives (Acetate ion, Glycerol)

Acetate ionACT
Glycerol

Pfam Families

PF08715CoV_peptidase

Coronavirus papain-like peptidase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 8UUG RCSB PDB: 8UUG PDBe: 8UUG UniProt: P0DTD1

Downloads

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