ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8uuuA2 - ECOD Domain | ECOD

ECOD/Domains/e8uuuA2

e8uuuA2

UID: 005205160

PDB

Range: A:64-318
PDB: 8UUU chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Papain-like protease nsp3

3D Structure

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Related Domains

Browse other domains in CoV_peptidase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyCoV_peptidase(219.1.1.43)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
N-{(1R)-1-[(3P,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamideXYR
Zinc ionZN
metal

+ 2 additives (Acetate ion, Glycerol)

Acetate ionACT
Glycerol

Pfam Families

PF08715CoV_peptidase

Coronavirus papain-like peptidase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 8UUU RCSB PDB: 8UUU PDBe: 8UUU UniProt: P0DTD1

Downloads

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