ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8vmvA1 - ECOD Domain | ECOD

ECOD/Domains/e8vmvA1

e8vmvA1

UID: 005212619

PDB

Range: A:1-162
PDB: 8VMV chain A(all domains)
UniProt: Q94702 (all domains)

Molecule: Intron-encoded endonuclease I-PpoI

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-His_Me_endon →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupHis-Me finger endonucleases(378)

HH-groupHis-Me finger endonucleases(378.1)

TT-groupHis-Me finger endonucleases(378.1.1)

FFamilyzf-His_Me_endon(378.1.1.6)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Sodium ionNA
metal
Zinc ionZN
metal

+ 1 additive (Glycerol)

GlycerolGOL

Pfam Families

PF05551zf-His_Me_endon

Zinc-binding loop region of homing endonuclease

ClanCL0263His-Me_finger

External Links

ECOD PDB View: 8VMV RCSB PDB: 8VMV PDBe: 8VMV UniProt: Q94702

Downloads

Download Domain PDB Full PDB Structure

Shown in the structure viewer.