ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vnkA1 - ECOD Domain | ECOD

ECOD/Domains/e8vnkA1

e8vnkA1

UID: 005212667

PDB

Range: A:1-162
PDB: 8VNK chain A(all domains)
UniProt: Q94702 (all domains)

Molecule: Intron-encoded endonuclease I-PpoI

3D Structure

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Related Domains

Browse other domains in zf-His_Me_endon →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupHis-Me finger endonucleases(378)

HH-groupHis-Me finger endonucleases(378.1)

TT-groupHis-Me finger endonucleases(378.1.1)

FFamilyzf-His_Me_endon(378.1.1.6)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
Sodium ionNA
metal
Zinc ionZN
metal

+ 1 additive (Glycerol)

GlycerolGOL

Pfam Families

PF05551zf-His_Me_endon

Zinc-binding loop region of homing endonuclease

ClanCL0263His-Me_finger

External Links

ECOD PDB View: 8VNK RCSB PDB: 8VNK PDBe: 8VNK UniProt: Q94702

Downloads

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