ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vr5B1 - ECOD Domain | ECOD

ECOD/Domains/e8vr5B1

e8vr5B1

UID: 005213634

PDB

Range: B:35-255
PDB: 8VR5 chain B(all domains)

Molecule: DegT/DnrJ/EryC1/StrS aminotransferase

3D Structure

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Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyDegT_DnrJ_EryC1(3016.1.1.6)

Ligands

in contact, ≤ 4 Å

2,2'-(1,4-diazepane-1,4-diyl)di(ethane-1-sulfonic acid)A1ADI
Chloride ionCL
Sodium ionNA
metal
N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACIDPDG

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 8VR5 RCSB PDB: 8VR5 PDBe: 8VR5

Downloads

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