ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vzhA3 - ECOD Domain | ECOD

ECOD/Domains/e8vzhA3

e8vzhA3

UID: 005216456

PDB

Range: A:366-539
PDB: 8VZH chain A(all domains)

Molecule: Oxalyl-CoA decarboxylase

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

ADENOSINE-5'-DIPHOSPHATEADP
Chloride ionCL
Magnesium ionMG
metal
Thiamine diphosphateTPP

+ 2 additives (1,2-ETHANEDIOL, Phosphate ion)

1,2-ETHANEDIOLEDO

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 8VZH RCSB PDB: 8VZH PDBe: 8VZH

Downloads

Download Domain PDB Full PDB Structure

Phosphate ionPO4

Shown in the structure viewer.