ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8xuuA1 - ECOD Domain | ECOD

ECOD/Domains/e8xuuA1

e8xuuA1

UID: 005233441

PDB

Range: A:1-288,A:466-468,A:584-585,A:605-606,A:651-652
PDB: 8XUU chain A(all domains)

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

2-O-sulfo-beta-L-altropyranuronic acidIDU
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer.

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 8XUU RCSB PDB: 8XUU PDBe: 8XUU

Downloads

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