ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8y1dB4 - ECOD Domain | ECOD

ECOD/Domains/e8y1dB4

e8y1dB4

UID: 005234918

PDB

Range: B:616-637,B:840-847,B:852-894,B:898-1013
PDB: 8Y1D chain B(all domains)

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in CoV_S2, CoV_S1_C →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupBeta domain of coronavirus spike glycoprotein(1043)

HH-groupBeta domain of coronavirus spike glycoprotein(1043.1)

TT-groupBeta domain of coronavirus spike glycoprotein(1043.1.1)

FFamilyCoV_S2, CoV_S1_C(1043.1.1.4)

Ligands

in contact, ≤ 4 Å

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer.

Pfam Families

Coronavirus spike glycoprotein S2

ClanCL0595Fusion_gly

PF19209CoV_S1_C

Coronavirus spike glycoprotein S1, C-terminal

External Links

ECOD PDB View: 8Y1D RCSB PDB: 8Y1D PDBe: 8Y1D

Downloads

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