ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8y1eB4 - ECOD Domain | ECOD

ECOD/Domains/e8y1eB4

e8y1eB4

UID: 005234935

PDB

Range: B:616-637,B:840-847,B:852-894,B:898-1013
PDB: 8Y1E chain B(all domains)

Molecule: Spike glycoprotein

3D Structure

Loading viewer...

Related Domains

Browse other domains in CoV_S2, CoV_S1_C →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupBeta domain of coronavirus spike glycoprotein(1043)

HH-groupBeta domain of coronavirus spike glycoprotein(1043.1)

TT-groupBeta domain of coronavirus spike glycoprotein(1043.1.1)

FFamilyCoV_S2, CoV_S1_C(1043.1.1.4)

Ligands

in contact, ≤ 4 Å

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer.

Pfam Families

Coronavirus spike glycoprotein S2

ClanCL0595Fusion_gly

PF19209CoV_S1_C

Coronavirus spike glycoprotein S1, C-terminal

External Links

ECOD PDB View: 8Y1E RCSB PDB: 8Y1E PDBe: 8Y1E

Downloads

Download Domain PDB Full PDB Structure