ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8yioN2 - ECOD Domain | ECOD

ECOD/Domains/e8yioN2

e8yioN2

UID: 005239166

PDB

Range: N:14-261
PDB: 8YIO chain N(all domains)
UniProt: P00163 (all domains)
Gene: COB

Molecule: Cytochrome b

3D Structure

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Related Domains

Browse other domains in Cytochrome_B, Cytochrom_B_N_2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyCytochrome_B, Cytochrom_B_N_2(5069.1.1.54)

Ligands

in contact, ≤ 4 Å

(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate6PH
(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate8PE
(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate9PE
METHYL (2Z)-2-(2-{[6-(2-CYANOPHENOXY)PYRIMIDIN-4-YL]OXY}PHENYL)-3-METHOXYACRYLATEAZO
(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate

Pfam Families

PF00033Cytochrome_B

Cytochrome b/b6/petB

ClanCL03282heme_cytochrom

PF13631Cytochrom_B_N_2

Cytochrome b(N-terminal)/b6/petB

ClanCL03282heme_cytochrom

External Links

ECOD PDB View: 8YIO RCSB PDB: 8YIO PDBe: 8YIO UniProt: P00163

Downloads

Download Domain PDB Full PDB Structure

(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoateCN5

Protoporphyrin ix containing feHEM

5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOLUQ6

Shown in the structure viewer.