ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8yr2B1 - ECOD Domain | ECOD

ECOD/Domains/e8yr2B1

e8yr2B1

UID: 005241202

PDB

Range: B:60-557
PDB: 8YR2 chain B(all domains)

Molecule: Sodium-dependent noradrenaline transporter

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySNF(5051.1.1.1)

Ligands

in contact, ≤ 4 Å

nisoxetine41U
[(2R)-2-octanoyloxy-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoateA1LX7
Chloride ionCL
CholesterolCLR
Sodium ionNA
metal

Pfam Families

Sodium:neurotransmitter symporter family

ClanCL0062APC

External Links

ECOD PDB View: 8YR2 RCSB PDB: 8YR2 PDBe: 8YR2

Downloads

Download Domain PDB Full PDB Structure

[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate

Shown in the structure viewer.