ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8yr5D2 - ECOD Domain | ECOD

ECOD/Domains/e8yr5D2

e8yr5D2

UID: 005241214

PDB

Range: D:246-461
PDB: 8YR5 chain D(all domains)

Molecule: CDP-diacylglycerol--serine O-phosphatidyltransferase

3D Structure

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Related Domains

Browse other domains in PLDc_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyPLDc_2(300.1.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer.

Pfam Families

Cardiolipin synthase, PLD-like domain

ClanCL0479PLD

External Links

ECOD PDB View: 8YR5 RCSB PDB: 8YR5 PDBe: 8YR5

Downloads

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