ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8z9dC1 - ECOD Domain | ECOD

ECOD/Domains/e8z9dC1

e8z9dC1

UID: 005244921

PDB

Range: C:24-472
PDB: 8Z9D chain C(all domains)
UniProt: P06003 (all domains)
Gene: psbC

Molecule: Photosystem II CP43 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta-caroteneBCR
Chloride ionCL
Chlorophyll aCLA
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 8Z9D RCSB PDB: 8Z9D PDBe: 8Z9D UniProt: P06003

Downloads

Download Domain PDB Full PDB Structure

Dodecyl-alpha-d-maltosideLMU

CA-MN4-O5 CLUSTEROEX

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer.